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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST041365
species: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169k (MI0002261)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGACTTGCCTG

miRNA*
AGCAAGTGTCCTTGGCTAACG

mismatches: 2
bulges: 2

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pre-miRNA
TCTTGTTTGGTAGCCAAGGATGACTTGCCTGTAGCCTCCCTCGGATTCATGAACACGAGCATTTATGTGGTGCTCAAAAGAAAAGGAGAGAATGATCCCA
GCTGGCAGCGACAAGGTCAATCCATTGAAGTAGCGAGAAGCAGGTGATTTATAGCTAGAATCCACAAGAGGTTCCCAGCAAGTGTCCTTGGCTAACGAGA
CGG


dot-bracket secondary structure
...(((((.((((((((((((.((((((..(.((((((....((((((........(((((((.....)))))))...........((.....((((((.
(((.((.((..(((((.....)).)))..)).))....))).)).)))).....)).))))))....)))))).)..)))))))))))))))).)).)))
)).



SIMILARITIES
miRBase ptc-MIR169m: 0.0000000002

PMRD ptc-miR169k: 4e-113

microPC miR169: 6e-66
UniProt no hits

RFAM MIR169_2: 7e-112

Identical with: ptc-miR169k from PMRD (MNEST051668)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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